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Caul_1860 Caul_1860 Caul_1861 Caul_1861 Caul_2428 Caul_2428 Caul_3282 Caul_3282 Caul_2648 Caul_2648 Caul_0141 Caul_0141 Caul_2124 Caul_2124 Caul_2728 Caul_2728 Caul_1969 Caul_1969 Caul_1990 Caul_1990 Caul_4079 Caul_4079
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_1860anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: xac:XAC2192 two-component system sensor protein. (332 aa)    
Predicted Functional Partners:
Caul_1861
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pap:PSPA7_4091 probable sigma-70 factor, ECF subfamily.
 
 
 0.958
Caul_2428
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: swi:Swit_4736 RNA polymerase, sigma-24 subunit, ECF subfamily.
 
 
 0.832
Caul_3282
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: swi:Swit_0923 RNA polymerase, sigma-24 subunit, ECF subfamily.
 
 
 0.832
Caul_2648
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: xau:Xaut_2777 RNA polymerase, sigma-24 subunit, ECF subfamily.
 
 
 0.830
Caul_0141
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rru:Rru_A1438 sigma-24 (FecI); Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.829
Caul_2124
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pau:PA14_47400 putative sigma-70 factor, ECF subfamily.
 
 
 0.829
Caul_2728
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: swi:Swit_4736 RNA polymerase, sigma-24 subunit, ECF subfamily.
 
 
 0.829
Caul_1969
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pap:PSPA7_4091 probable sigma-70 factor, ECF subfamily.
 
 
 0.828
Caul_1990
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ccr:CC_2707 RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.828
Caul_4079
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ccr:CC_0981 RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.828
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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