STRINGSTRING
exbD2 exbD2 exbB exbB tonB tonB exbB-2 exbB-2 tonB-3 tonB-3 tonB-2 tonB-2 tolQ tolQ exbD1 exbD1 XCC1593 XCC1593 XCC2081 XCC2081 XCC3967 XCC3967
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
exbD2Biopolymer transport ExbD2 protein; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates. (136 aa)    
Predicted Functional Partners:
exbB
Biopolymer transport ExbB protein; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates. Protects ExbD from proteolytic degradation and functionally stabilizes TonB (By similarity).
 
 
 0.996
tonB
TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins (By similarity).
 
 
 0.980
exbB-2
Biopolymer transport protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.971
tonB-3
TonB protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.960
tonB-2
TonB like protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.952
tolQ
TolQ protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.931
exbD1
Biopolymer transport ExbD1 protein; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates.
 
   
0.886
XCC1593
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.776
XCC2081
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.766
XCC3967
TonB-like protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.764
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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