STRINGSTRING
gaa gaa XCC1163 XCC1163 fecA-9 fecA-9 fecA fecA XCC3517 XCC3517 XCC0303 XCC0303 XCC2829 XCC2829 XCC3921 XCC3921 XCC2830 XCC2830 XCC4180 XCC4180 XCC2402 XCC2402
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gaaglutaryl-7-ACA acylase precursor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (637 aa)    
Predicted Functional Partners:
XCC1163
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.714
fecA-9
TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.659
fecA
TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.603
XCC3517
Aminopeptidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.580
XCC0303
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.552
XCC2829
Peptidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.536
XCC3921
Peptidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.536
XCC2830
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
 
   
 0.535
XCC4180
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.506
XCC2402
Conserved hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
     0.471
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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