STRINGSTRING
XCC4009 XCC4009 acpC acpC XCC4004 XCC4004 XCC4007 XCC4007 XCC4008 XCC4008 XCC3999 XCC3999 fabF-2 fabF-2 actII-3 actII-3 XCC4011 XCC4011 rapK rapK XCC4013 XCC4013
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC4009Dehydratase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (95 aa)    
Predicted Functional Partners:
acpC
Acyl carrier protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.957
XCC4004
Phosphotransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 
 0.955
XCC4007
Fatty acyl CoA synthetase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.951
XCC4008
Acyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.950
XCC3999
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.925
fabF-2
beta-ketoacyl-[ACP] synthase II; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.906
actII-3
Membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.905
XCC4011
Ketosynthase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.898
rapK
Pteridine-dependent deoxygenase like protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.879
XCC4013
Reductase/halogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.852
Your Current Organism:
Xanthomonas campestris
NCBI taxonomy Id: 190485
Other names: X. campestris pv. campestris str. ATCC 33913, Xanthomonas campestris pv. campestris str. ATCC 33913
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