Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
APO91100.1 | BJD11_16835 | BJD11_14620 | BJD11_16835 | Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the IUNH family. | 0.416 |
APO91100.1 | rbsK | BJD11_14620 | BJD11_18435 | Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | 0.584 |
APO91467.1 | BJD11_16835 | BJD11_16840 | BJD11_16835 | TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the IUNH family. | 0.561 |
BJD11_16835 | APO91100.1 | BJD11_16835 | BJD11_14620 | Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the IUNH family. | Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.416 |
BJD11_16835 | APO91467.1 | BJD11_16835 | BJD11_16840 | Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the IUNH family. | TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.561 |
BJD11_16835 | polA | BJD11_16835 | BJD11_24395 | Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the IUNH family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.454 |
BJD11_16835 | rbsK | BJD11_16835 | BJD11_18435 | Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the IUNH family. | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | 0.861 |
polA | BJD11_16835 | BJD11_24395 | BJD11_16835 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the IUNH family. | 0.454 |
rbsK | APO91100.1 | BJD11_18435 | BJD11_14620 | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.584 |
rbsK | BJD11_16835 | BJD11_18435 | BJD11_16835 | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the IUNH family. | 0.861 |