STRINGSTRING
ampr1 ampr1 CCE96629.1 CCE96629.1 CCE94569.1 CCE94569.1 CCE95554.1 CCE95554.1 CCE97387.1 CCE97387.1 lrhA lrhA CCE95149.1 CCE95149.1 oxyr3 oxyr3 oxyr1 oxyr1 CCE94950.1 CCE94950.1 CCE95148.1 CCE95148.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
ampr1HTH-type transcriptional activator ampR; Belongs to the LysR transcriptional regulatory family. (311 aa)    
Predicted Functional Partners:
CCE96629.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.691
CCE94569.1
Putative transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.690
CCE95554.1
Putative transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.660
CCE97387.1
Putative transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.660
lrhA
Probable HTH-type transcriptional regulator lrhA; Belongs to the LysR transcriptional regulatory family.
  
     0.571
CCE95149.1
Hypothetical protein.
       0.546
oxyr3
Hydrogen peroxide-inducible genes activator; Belongs to the LysR transcriptional regulatory family.
  
     0.539
oxyr1
Hydrogen peroxide-inducible genes activator; Belongs to the LysR transcriptional regulatory family.
  
     0.478
CCE94950.1
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.456
CCE95148.1
Uncharacterized protein Mb2600.
       0.449
Your Current Organism:
Sinorhizobium fredii HH103
NCBI taxonomy Id: 1117943
Other names: S. fredii HH103, Sinorhizobium fredii str. HH103, Sinorhizobium fredii strain HH103
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