STRINGSTRING
aotp1 aotp1 occM occM hisq3 hisq3 argt5 argt5 argt1 argt1 argt7 argt7 hisM hisM PKB_5443 PKB_5443 PKB_5442 PKB_5442 hisq1 hisq1 PKB_4716 PKB_4716
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aotp1Arginine/ornithine transport ATP-binding protein AotP. (254 aa)    
Predicted Functional Partners:
occM
Octopine transport system permease protein occM.
 
 0.990
hisq3
Histidine transport system permease protein hisQ.
 
 
 0.989
argt5
Lysine-arginine-ornithine-binding periplasmic protein; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.972
argt1
Lysine-arginine-ornithine-binding periplasmic protein.
 
 
 0.956
argt7
Lysine-arginine-ornithine-binding periplasmic protein.
 
 
 0.956
hisM
Histidine transport system permease protein hisM.
  
 0.871
PKB_5443
ABC transporter permease.
  
 0.871
PKB_5442
ABC transporter permease.
  
 0.862
hisq1
Histidine transport system permease protein hisQ.
  
 0.853
PKB_4716
Amine acid ABC transporter, permease protein,3-TM region, His/Glu/Gln/Arg/opine family.
 
  
 0.851
Your Current Organism:
Pseudomonas knackmussii
NCBI taxonomy Id: 1301098
Other names: P. knackmussii B13, Pseudomonas knackmussii B13, Pseudomonas knackmussii LMG 23759, Pseudomonas sp. (strain B13), Pseudomonas sp. B13, Pseudomonas sp. DSM 6978
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