STRINGSTRING
aprD2 aprD2 prsE3 prsE3 prsE1 prsE1 prsE2 prsE2 AFL53941.1 AFL53941.1 AFL53942.1 AFL53942.1 AFL51778.1 AFL51778.1 AFL51455.1 AFL51455.1 AFL51454.1 AFL51454.1 AFL51383.1 AFL51383.1 AFL52892.1 AFL52892.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aprD2Alkaline protease secretion ATP-binding protein AprD. (779 aa)    
Predicted Functional Partners:
prsE3
Type I secretion system membrane fusion protein PrsE.
  
 0.956
prsE1
Type I secretion system membrane fusion protein PrsE.
  
 0.801
prsE2
Type I secretion system membrane fusion protein PrsE.
  
 0.801
AFL53941.1
Hypothetical protein.
 
     0.756
AFL53942.1
Hypothetical protein.
 
     0.683
AFL51778.1
Putative hemolysin-type calcium-binding region, possible nodulation protein O.
 
 
 0.676
AFL51455.1
Putative protease.
 
 
 0.670
AFL51454.1
Putative protease.
 
 
 0.668
AFL51383.1
Hemolysin-type calcium-binding region.
 
 
 0.655
AFL52892.1
Hypothetical protein.
 
 
 0.640
Your Current Organism:
Sinorhizobium fredii USDA257
NCBI taxonomy Id: 1185652
Other names: S. fredii USDA 257, Sinorhizobium fredii USDA 257, Sinorhizobium fredii str. USDA 257, Sinorhizobium fredii strain USDA 257
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