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argt5 argt5 hisq3 hisq3 occM occM aotp1 aotp1 yecS yecS argt1 argt1 argt7 argt7 PKB_2269 PKB_2269 gltK gltK PKB_5379 PKB_5379 PKB_5442 PKB_5442
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
argt5Lysine-arginine-ornithine-binding periplasmic protein; Belongs to the bacterial solute-binding protein 3 family. (259 aa)    
Predicted Functional Partners:
hisq3
Histidine transport system permease protein hisQ.
 0.981
occM
Octopine transport system permease protein occM.
 
 0.980
aotp1
Arginine/ornithine transport ATP-binding protein AotP.
 
 
 0.972
yecS
Inner membrane amino-acid ABC transporter permease protein yecS.
 
 0.919
argt1
Lysine-arginine-ornithine-binding periplasmic protein.
  
  
 
0.902
argt7
Lysine-arginine-ornithine-binding periplasmic protein.
  
  
 
0.901
PKB_2269
Amine acid ABC transporter, permease protein,3-TM region, His/Glu/Gln/Arg/opine family.
 
 0.875
gltK
Glutamate/aspartate transport system permease protein gltK.
 
 0.873
PKB_5379
Polar amino acid ABC transporter inner membrane subunit.
 
 0.852
PKB_5442
ABC transporter permease.
 
 0.833
Your Current Organism:
Pseudomonas knackmussii
NCBI taxonomy Id: 1301098
Other names: P. knackmussii B13, Pseudomonas knackmussii B13, Pseudomonas knackmussii LMG 23759, Pseudomonas sp. (strain B13), Pseudomonas sp. B13, Pseudomonas sp. DSM 6978
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