STRINGSTRING
betC1 betC1 betA1 betA1 betI2 betI2 betB betB AGI70816.1 AGI70816.1 alkJ alkJ betA2 betA2 AGI74592.1 AGI74592.1 betA3 betA3 glgC glgC AGI70821.1 AGI70821.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
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Experiments
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Textmining
[Homology]
Score
betC1Choline-sulfatase BetC. (502 aa)    
Predicted Functional Partners:
betA1
Choline dehydrogenase BetA; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
 
  
 0.902
betI2
Transcriptional regulator; Repressor involved in choline regulation of the bet genes.
 
   
 0.836
betB
Betaine aldehyde dehydrogenase BetB; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
 
  
 0.814
AGI70816.1
Putative choline ABC transporter periplasmatic substrate binding protein.
 
     0.628
alkJ
Alcohol dehydrogenase.
    
 0.532
betA2
Choline dehydrogenase BetA; 'alternative name(s): CHD; CDH'.
    
 0.532
AGI74592.1
Putative choline dehydrogenase.
    
 0.532
betA3
Choline dehydrogenase BetA; 'alternative name(s): CHD; CDH'.
    
 0.532
glgC
Glucose-1-phosphate adenylyltransferase GlgC; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
   
    0.523
AGI70821.1
Hypothetical protein; Staphylococcal nuclease-like, conserved.
       0.487
Your Current Organism:
Octadecabacter arcticus
NCBI taxonomy Id: 391616
Other names: O. arcticus 238, Octadecabacter arcticus 238, Octadecabacter arcticus CIP 106732, Octadecabacter arcticus str. 238, Octadecabacter arcticus strain 238
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