ACR31076.1 protein (Burkholderia glumae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACR31076.1

Putative ubiquinone/menaquinone biosynthesis methyltransferase. (245 aa)

Predicted Functional Partners:

ACR31078.1

0.803

ACR31077.1

0.788

ACR31080.1

0.591

ACR29034.1

0.543

ACR31379.1

0.543

ACR31395.1

0.543

ACR31662.1

0.543

ACR31079.1

0.516

ACR29414.1

0.495

ACR31661.1

0.444

Your Current Organism:

Burkholderia glumae

NCBI taxonomy Id: 626418
Other names: B. glumae BGR1, Burkholderia glumae BGR1, Burkholderia glumae str. BGR1, Burkholderia glumae strain BGR1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACR29034.1	ACR29414.1	bglu_1g19210	bglu_1g23220	Non-ribosomal peptide synthetase.	Methyltransferase type 11.	0.543
ACR29034.1	ACR31076.1	bglu_1g19210	bglu_2g06400	Non-ribosomal peptide synthetase.	Putative ubiquinone/menaquinone biosynthesis methyltransferase.	0.543
ACR29034.1	ACR31078.1	bglu_1g19210	bglu_2g06420	Non-ribosomal peptide synthetase.	WD-repeat-containing protein.	0.579
ACR29034.1	ACR31079.1	bglu_1g19210	bglu_2g06430	Non-ribosomal peptide synthetase.	Serine/threonine kinase.	0.439
ACR29034.1	ACR31080.1	bglu_1g19210	bglu_2g06440	Non-ribosomal peptide synthetase.	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.	0.405
ACR29034.1	ACR31379.1	bglu_1g19210	bglu_2g09750	Non-ribosomal peptide synthetase.	PvdI.	0.999
ACR29034.1	ACR31395.1	bglu_1g19210	bglu_2g09910	Non-ribosomal peptide synthetase.	Non-ribosomal peptide synthetase/polyketide synthase.	0.999
ACR29034.1	ACR31661.1	bglu_1g19210	bglu_2g12870	Non-ribosomal peptide synthetase.	Saframycin Mx1 synthetase.	0.999
ACR29034.1	ACR31662.1	bglu_1g19210	bglu_2g12880	Non-ribosomal peptide synthetase.	Non-ribosomal peptide synthetase.	0.999
ACR29414.1	ACR29034.1	bglu_1g23220	bglu_1g19210	Methyltransferase type 11.	Non-ribosomal peptide synthetase.	0.543
ACR29414.1	ACR31076.1	bglu_1g23220	bglu_2g06400	Methyltransferase type 11.	Putative ubiquinone/menaquinone biosynthesis methyltransferase.	0.495
ACR29414.1	ACR31379.1	bglu_1g23220	bglu_2g09750	Methyltransferase type 11.	PvdI.	0.543
ACR29414.1	ACR31395.1	bglu_1g23220	bglu_2g09910	Methyltransferase type 11.	Non-ribosomal peptide synthetase/polyketide synthase.	0.543
ACR29414.1	ACR31661.1	bglu_1g23220	bglu_2g12870	Methyltransferase type 11.	Saframycin Mx1 synthetase.	0.444
ACR29414.1	ACR31662.1	bglu_1g23220	bglu_2g12880	Methyltransferase type 11.	Non-ribosomal peptide synthetase.	0.543
ACR31076.1	ACR29034.1	bglu_2g06400	bglu_1g19210	Putative ubiquinone/menaquinone biosynthesis methyltransferase.	Non-ribosomal peptide synthetase.	0.543
ACR31076.1	ACR29414.1	bglu_2g06400	bglu_1g23220	Putative ubiquinone/menaquinone biosynthesis methyltransferase.	Methyltransferase type 11.	0.495
ACR31076.1	ACR31077.1	bglu_2g06400	bglu_2g06410	Putative ubiquinone/menaquinone biosynthesis methyltransferase.	Putative GTP cyclohydrolase II.	0.788
ACR31076.1	ACR31078.1	bglu_2g06400	bglu_2g06420	Putative ubiquinone/menaquinone biosynthesis methyltransferase.	WD-repeat-containing protein.	0.803
ACR31076.1	ACR31079.1	bglu_2g06400	bglu_2g06430	Putative ubiquinone/menaquinone biosynthesis methyltransferase.	Serine/threonine kinase.	0.516