STRINGSTRING
SAL43043.1 SAL43043.1 SAL60201.1 SAL60201.1 SAL40604.1 SAL40604.1 SAL09769.1 SAL09769.1 SAL39947.1 SAL39947.1 SAL31033.1 SAL31033.1 SAL34874.1 SAL34874.1 SAL72371.1 SAL72371.1 SAL11884.1 SAL11884.1 SAL51847.1 SAL51847.1 SAL20066.1 SAL20066.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAL43043.1Trimeric autotransporter adhesin, BpaC. (275 aa)    
Predicted Functional Partners:
SAL60201.1
Porin.
  
  
  0.667
SAL40604.1
Membrane protein SmpA.
 
   
 0.626
SAL09769.1
PF04357 family protein.
 
     0.557
SAL39947.1
Hypothetical protein.
  
     0.544
SAL31033.1
Porin.
  
  
  0.535
SAL34874.1
Outer membrane porin lipoprotein.
  
  
  0.528
SAL72371.1
Porin.
  
  
  0.524
SAL11884.1
Porin.
  
  
  0.523
SAL51847.1
Outer membrane protein (porin).
  
  
  0.518
SAL20066.1
Porin protein.
  
  
  0.502
Your Current Organism:
Caballeronia udeis
NCBI taxonomy Id: 1232866
Other names: Burkholderia sp. LMG 27134, Burkholderia sp. LMG 27135, Burkholderia sp. R-20941, Burkholderia udeis, Burkholderia udeis Vandamme et al. 2013, C. udeis, CCUG 63061, Caballeronia udeis (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 27134, LMG:27134, Paraburkholderia udeis, strain Hg2
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