STRINGSTRING
DM82_5846 DM82_5846 spaK spaK epaP-4 epaP-4 epaO-4 epaO-4 DM82_5847 DM82_5847 spaL spaL invA-2 invA-2 fliQ_3 fliQ_3 mxiC mxiC invG_5 invG_5 invF invF
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_5846Putative bsaU protein. (374 aa)    
Predicted Functional Partners:
spaK
Invasion B family protein.
  
    0.785
epaP-4
yscR: type III secretion apparatus protein, YscR/HrcR family.
  
    0.781
epaO-4
spaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family.
       0.781
DM82_5847
Hypothetical protein.
       0.781
spaL
Putative ATP synthase SpaL.
  
    0.781
invA-2
Invasion protein invA.
  
    0.770
fliQ_3
fliQ_rel_III: type III secretion, HrpO family protein.
       0.667
mxiC
lcrE: type III secretion regulator YopN/LcrE/InvE/MxiC.
  
    0.642
invG_5
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family.
  
    0.636
invF
Helix-turn-helix domain protein.
       0.617
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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