STRINGSTRING
RB3794 RB3794 RB3800 RB3800 RB767 RB767 RB6190 RB6190 RB9002 RB9002 celP celP RB5253 RB5253 RB6629 RB6629 RB2662 RB2662 butB butB RB8992 RB8992
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB3794PMID: 9252185 best DB hits: BLAST: pir:B64528; conserved hypothetical ATP-binding protein HP0066 -; E=2e-31 pir:A71979; hypothetical protein jhp0061 - Helicobacter pylori (strain; E=6e-31 ddbj:BAA33499.1; (AB003309) cdrA [Helicobacter pylori]; E=9e-29 COG: HP0066; COG1674 DNA segregation ATPase FtsK/SpoIIIE and related; E=2e-32 PFAM: PF00005; ABC transporter; E=0.0065 PF00004; ATPase family associated with; E=0.24 PF01580; FtsK/SpoIIIE family; E=9.4e-24. (1412 aa)    
Predicted Functional Partners:
RB3800
Hypothetical protein.
       0.671
RB767
Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: PFAM: PF01453; Lectin (probable mannose binding); E=0.047.
  
     0.613
RB6190
Conserved hypothetical protein; Best DB hits: BLAST: embl:CAC24059.1; (AL512981) Hypothetical [Sulfolobus; E=0.17.
 
     0.589
RB9002
Hypothetical protein-transmembrane prediction.
 
   
 0.558
celP
Conserved hypothetical protein; Best DB hits: BLAST: embl:CAB76936.1; (AJ275974) putative cellulosomal protein; E=6e-11 swissprot:Q45535; COTH_BACSU INNER SPORE COAT PROTEIN H -----; E=0.77.
  
     0.544
RB5253
Similar to S-layer related protein; PMID: 7522196 best DB hits: BLAST: swissprot:P35824; SLAP_BACCI S-LAYER RELATED PROTEIN PRECURSOR; E=0.18 PFAM: PF02369; Bacterial Ig-like domain (group 1); E=0.1 PF02368; Bacterial Ig-like domain (group 2); E=0.013.
  
     0.525
RB6629
Conserved hypothetical protein; PMID: 10360571 best DB hits: BLAST: pir:F72424; hypothetical protein - Thermotoga maritima (strain MSB8); E=0.28.
  
     0.517
RB2662
Hypothetical protein-signal peptide and transmembrane prediction.
   
 
 0.516
butB
PMID: 7522196 best DB hits: BLAST: swissprot:P35824; SLAP_BACCI S-LAYER RELATED PROTEIN PRECURSOR; E=4e-04 PFAM: PF02368; Bacterial Ig-like domain (group 2; E=0.013.
  
     0.505
RB8992
Hypothetical protein-transmembrane prediction.
 
     0.494
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.