Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Cgl0009 | Cgl0010 | cg0010 | cg0012 | Conserved hypothetical protein. | PUTATIVE TRANSCRIPTION REGULATOR PROTEIN. | 0.450 |
| Cgl0009 | Cgl0011 | cg0010 | cg0013 | Conserved hypothetical protein. | Bacterial regulatory proteins, tetR family. | 0.536 |
| Cgl0009 | Cgl0012 | cg0010 | cg0014 | Conserved hypothetical protein. | Helix-turn-helix protein, copG family. | 0.536 |
| Cgl0009 | Cgl0014 | cg0010 | cg0016 | Conserved hypothetical protein. | PUTATIVE INTEGRAL MEMBRANE PROTEIN. | 0.488 |
| Cgl0009 | gyrA | cg0010 | cg0015 | Conserved hypothetical protein. | DNA TOPOISOMERASE (ATP-HYDROLYSING); A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent [...] | 0.492 |
| Cgl0010 | Cgl0009 | cg0012 | cg0010 | PUTATIVE TRANSCRIPTION REGULATOR PROTEIN. | Conserved hypothetical protein. | 0.450 |
| Cgl0010 | Cgl0011 | cg0012 | cg0013 | PUTATIVE TRANSCRIPTION REGULATOR PROTEIN. | Bacterial regulatory proteins, tetR family. | 0.553 |
| Cgl0010 | Cgl0012 | cg0012 | cg0014 | PUTATIVE TRANSCRIPTION REGULATOR PROTEIN. | Helix-turn-helix protein, copG family. | 0.556 |
| Cgl0010 | Cgl0014 | cg0012 | cg0016 | PUTATIVE TRANSCRIPTION REGULATOR PROTEIN. | PUTATIVE INTEGRAL MEMBRANE PROTEIN. | 0.411 |
| Cgl0010 | gyrA | cg0012 | cg0015 | PUTATIVE TRANSCRIPTION REGULATOR PROTEIN. | DNA TOPOISOMERASE (ATP-HYDROLYSING); A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent [...] | 0.431 |
| Cgl0011 | Cgl0009 | cg0013 | cg0010 | Bacterial regulatory proteins, tetR family. | Conserved hypothetical protein. | 0.536 |
| Cgl0011 | Cgl0010 | cg0013 | cg0012 | Bacterial regulatory proteins, tetR family. | PUTATIVE TRANSCRIPTION REGULATOR PROTEIN. | 0.553 |
| Cgl0011 | Cgl0012 | cg0013 | cg0014 | Bacterial regulatory proteins, tetR family. | Helix-turn-helix protein, copG family. | 0.834 |
| Cgl0011 | Cgl0014 | cg0013 | cg0016 | Bacterial regulatory proteins, tetR family. | PUTATIVE INTEGRAL MEMBRANE PROTEIN. | 0.685 |
| Cgl0011 | gyrA | cg0013 | cg0015 | Bacterial regulatory proteins, tetR family. | DNA TOPOISOMERASE (ATP-HYDROLYSING); A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent [...] | 0.685 |
| Cgl0012 | Cgl0009 | cg0014 | cg0010 | Helix-turn-helix protein, copG family. | Conserved hypothetical protein. | 0.536 |
| Cgl0012 | Cgl0010 | cg0014 | cg0012 | Helix-turn-helix protein, copG family. | PUTATIVE TRANSCRIPTION REGULATOR PROTEIN. | 0.556 |
| Cgl0012 | Cgl0011 | cg0014 | cg0013 | Helix-turn-helix protein, copG family. | Bacterial regulatory proteins, tetR family. | 0.834 |
| Cgl0012 | Cgl0014 | cg0014 | cg0016 | Helix-turn-helix protein, copG family. | PUTATIVE INTEGRAL MEMBRANE PROTEIN. | 0.685 |
| Cgl0012 | gyrA | cg0014 | cg0015 | Helix-turn-helix protein, copG family. | DNA TOPOISOMERASE (ATP-HYDROLYSING); A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent [...] | 0.685 |
page 1 of 2