Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ureA | ureB | cg0113 | cg0114 | PROBABLE UREASE GAMMA SUBUNIT. | UREASE BETA SUBUNIT. | 0.999 |
ureA | ureC | cg0113 | cg0115 | PROBABLE UREASE GAMMA SUBUNIT. | UREASE ALPHA SUBUNIT; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | 0.999 |
ureA | ureD | cg0113 | cg0119 | PROBABLE UREASE GAMMA SUBUNIT. | UREASE ACCESSORY PROTEIN; Probably acts in the maturation of urease via the functional incorporation of the urease nickel metallocenter (By similarity). Required for urease expression. | 0.977 |
ureA | ureE | cg0113 | cg0116 | PROBABLE UREASE GAMMA SUBUNIT. | UREASE ACCESSORY PROTEIN; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. | 0.964 |
ureA | ureF | cg0113 | cg0117 | PROBABLE UREASE GAMMA SUBUNIT. | UREASE ACCESSORY PROTEIN; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter; Belongs to the UreF family. | 0.988 |
ureA | ureG | cg0113 | cg0118 | PROBABLE UREASE GAMMA SUBUNIT. | UREASE ACCESSORY PROTEIN; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG; Belongs to the SIMIBI class G3E GTPase family. UreG subfamily. | 0.986 |
ureA | ureR | cg0113 | cg0112 | PROBABLE UREASE GAMMA SUBUNIT. | Bacterial regulatory protein, MarR family. | 0.496 |
ureB | ureA | cg0114 | cg0113 | UREASE BETA SUBUNIT. | PROBABLE UREASE GAMMA SUBUNIT. | 0.999 |
ureB | ureC | cg0114 | cg0115 | UREASE BETA SUBUNIT. | UREASE ALPHA SUBUNIT; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | 0.999 |
ureB | ureD | cg0114 | cg0119 | UREASE BETA SUBUNIT. | UREASE ACCESSORY PROTEIN; Probably acts in the maturation of urease via the functional incorporation of the urease nickel metallocenter (By similarity). Required for urease expression. | 0.999 |
ureB | ureE | cg0114 | cg0116 | UREASE BETA SUBUNIT. | UREASE ACCESSORY PROTEIN; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. | 0.999 |
ureB | ureF | cg0114 | cg0117 | UREASE BETA SUBUNIT. | UREASE ACCESSORY PROTEIN; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter; Belongs to the UreF family. | 0.999 |
ureB | ureG | cg0114 | cg0118 | UREASE BETA SUBUNIT. | UREASE ACCESSORY PROTEIN; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG; Belongs to the SIMIBI class G3E GTPase family. UreG subfamily. | 0.999 |
ureB | ureR | cg0114 | cg0112 | UREASE BETA SUBUNIT. | Bacterial regulatory protein, MarR family. | 0.444 |
ureC | ureA | cg0115 | cg0113 | UREASE ALPHA SUBUNIT; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | PROBABLE UREASE GAMMA SUBUNIT. | 0.999 |
ureC | ureB | cg0115 | cg0114 | UREASE ALPHA SUBUNIT; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | UREASE BETA SUBUNIT. | 0.999 |
ureC | ureD | cg0115 | cg0119 | UREASE ALPHA SUBUNIT; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | UREASE ACCESSORY PROTEIN; Probably acts in the maturation of urease via the functional incorporation of the urease nickel metallocenter (By similarity). Required for urease expression. | 0.999 |
ureC | ureE | cg0115 | cg0116 | UREASE ALPHA SUBUNIT; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | UREASE ACCESSORY PROTEIN; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. | 0.999 |
ureC | ureF | cg0115 | cg0117 | UREASE ALPHA SUBUNIT; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | UREASE ACCESSORY PROTEIN; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter; Belongs to the UreF family. | 0.999 |
ureC | ureG | cg0115 | cg0118 | UREASE ALPHA SUBUNIT; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | UREASE ACCESSORY PROTEIN; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG; Belongs to the SIMIBI class G3E GTPase family. UreG subfamily. | 0.999 |
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