STRINGSTRING
Cgl0229 Cgl0229 Cgl0685 Cgl0685 rpmJ rpmJ nadA nadA Cgl0227 Cgl0227 tadA tadA Cgl2987 Cgl2987 tyrA tyrA tgt tgt Cgl2002 Cgl2002 Cgl1543 Cgl1543
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Cgl0229Conserved hypothetical protein; Belongs to the UPF0337 (CsbD) family. (67 aa)    
Predicted Functional Partners:
Cgl0685
Transcriptional regulator.
   
  
 0.979
rpmJ
Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
   
  
 0.704
nadA
QUINOLINATE SYNTHETASE; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.
  
   
 0.686
Cgl0227
Conserved hypothetical protein.
 
     0.676
tadA
PUTATIVE CYTOSINE DEAMINASE; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
  
    0.662
Cgl2987
Conserved hypothetical protein.
  
  
 0.656
tyrA
PUTATIVE PREPHENATE DEHYDROGENASE.
       0.532
tgt
PUTATIVE TRNA-GUANINE TRANSGLYCOSYLASE; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to [...]
       0.510
Cgl2002
Putative lysophospholipase.
  
     0.509
Cgl1543
Putative nucleoside-diphosphate-sugar epimerase.
   
    0.508
Your Current Organism:
Corynebacterium glutamicum
NCBI taxonomy Id: 196627
Other names: C. glutamicum ATCC 13032, Corynebacterium glutamicum ATCC 13032, Corynebacterium glutamicum str. ATCC 13032, Corynebacterium glutamicum strain ATCC 13032
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