Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Cgl0757 | Cgl0846 | cg0866 | cg0968 | Purine/pyrimidine phosphoribosyl transferase. | PUTATIVE ATP-DEPENDENT HELICASE. | 0.480 |
Cgl0846 | Cgl0757 | cg0968 | cg0866 | PUTATIVE ATP-DEPENDENT HELICASE. | Purine/pyrimidine phosphoribosyl transferase. | 0.480 |
Cgl0846 | Cgl0848 | cg0968 | cg0970 | PUTATIVE ATP-DEPENDENT HELICASE. | Membrane protein. | 0.803 |
Cgl0846 | cysQ | cg0968 | cg0967 | PUTATIVE ATP-DEPENDENT HELICASE. | 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase. | 0.690 |
Cgl0846 | folA | cg0968 | cg0965 | PUTATIVE ATP-DEPENDENT HELICASE. | DIHYDROFOLATE REDUCTASE. | 0.668 |
Cgl0846 | mrx1 | cg0968 | cg0964 | PUTATIVE ATP-DEPENDENT HELICASE. | Glutaredoxin or related protein; Involved in defense against toxic arsenate. Involved in the mycothiol/myoredoxin redox pathway which uses a mycothioltransferase mechanism; functions as a monothiol mixed disulfide reductase and is recycled by a second mycothiol forming mycothione which in turn is reduced in a NADPH-dependent manner. | 0.662 |
Cgl0846 | mutM2 | cg0968 | cg3328 | PUTATIVE ATP-DEPENDENT HELICASE. | PROBABLE FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE PROTEIN. | 0.648 |
Cgl0846 | nei | cg0968 | cg0969 | PUTATIVE ATP-DEPENDENT HELICASE. | ENDONUCLEASE VIII REMOVING OXIDIZED PYRIMIDINES MA; Belongs to the FPG family. | 0.989 |
Cgl0846 | radA | cg0968 | cg2950 | PUTATIVE ATP-DEPENDENT HELICASE. | PROBABLE ATP-DEPENDENT PROTEASE, DNA REPAIR (ATP-B; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.521 |
Cgl0846 | recA | cg0968 | cg2141 | PUTATIVE ATP-DEPENDENT HELICASE. | DNA RECOMBINATION/REPAIR; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.492 |
Cgl0846 | thyA | cg0968 | cg0966 | PUTATIVE ATP-DEPENDENT HELICASE. | PROBABLE THYMIDYLATE SYNTHASE; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis. | 0.668 |
Cgl0848 | Cgl0846 | cg0970 | cg0968 | Membrane protein. | PUTATIVE ATP-DEPENDENT HELICASE. | 0.803 |
Cgl0848 | cysQ | cg0970 | cg0967 | Membrane protein. | 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase. | 0.613 |
Cgl0848 | folA | cg0970 | cg0965 | Membrane protein. | DIHYDROFOLATE REDUCTASE. | 0.542 |
Cgl0848 | mrx1 | cg0970 | cg0964 | Membrane protein. | Glutaredoxin or related protein; Involved in defense against toxic arsenate. Involved in the mycothiol/myoredoxin redox pathway which uses a mycothioltransferase mechanism; functions as a monothiol mixed disulfide reductase and is recycled by a second mycothiol forming mycothione which in turn is reduced in a NADPH-dependent manner. | 0.521 |
Cgl0848 | nei | cg0970 | cg0969 | Membrane protein. | ENDONUCLEASE VIII REMOVING OXIDIZED PYRIMIDINES MA; Belongs to the FPG family. | 0.834 |
Cgl0848 | thyA | cg0970 | cg0966 | Membrane protein. | PROBABLE THYMIDYLATE SYNTHASE; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis. | 0.538 |
cysQ | Cgl0846 | cg0967 | cg0968 | 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase. | PUTATIVE ATP-DEPENDENT HELICASE. | 0.690 |
cysQ | Cgl0848 | cg0967 | cg0970 | 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase. | Membrane protein. | 0.613 |
cysQ | folA | cg0967 | cg0965 | 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase. | DIHYDROFOLATE REDUCTASE. | 0.848 |
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