STRINGSTRING
rsmI rsmI soxA soxA greA greA soxA-2 soxA-2 mraW mraW pmt pmt tadA tadA xseB xseB metS metS Cgl1903 Cgl1903 betP betP
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsmIUroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (282 aa)    
Predicted Functional Partners:
soxA
Sarcosine oxidase-fragment.
      
 0.919
greA
Transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
  
  
 0.866
soxA-2
Sarcosine oxidase-N-terminal fragment.
   
  
 0.835
mraW
S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
  
   
 0.730
pmt
Dolichyl-phosphate-mannose-protein mannosyltransferase; Transfers mannose from Dol-P-mannose to Ser or Thr residues on proteins; Belongs to the glycosyltransferase 39 family.
       0.688
tadA
PUTATIVE CYTOSINE DEAMINASE; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
 
    0.684
xseB
PUTATIVE EXODEOXYRIBONUCLEASE PROTEIN; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
   
  
 0.677
metS
METHIONYL-TRNA SYNTHETASE; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
  
 0.618
Cgl1903
PUTATIVE RNA METHYLTRANSFERASE; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
 
  
 0.574
betP
Glycine betaine transporter; Involved in response to osmotic stress. High-affinity glycine betaine-specific uptake system, which couples the uptake of glycine betaine to the symport of two Na(+) ions. Transport is driven both by the Na(+) gradient and by the electrical potential. In addition, functions both as an osmosensor and as an osmoregulator that transduces signal to the catalytic part of the carrier protein, which adapts its activity to the extent of osmotic stress.
  
    0.502
Your Current Organism:
Corynebacterium glutamicum
NCBI taxonomy Id: 196627
Other names: C. glutamicum ATCC 13032, Corynebacterium glutamicum ATCC 13032, Corynebacterium glutamicum str. ATCC 13032, Corynebacterium glutamicum strain ATCC 13032
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.