Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Cgl0908 | Cgl0912 | cg1035 | cg1040 | TatD related DNase. | ATPase component of ABC transporters with duplicated ATPase domains. | 0.537 |
| Cgl0908 | ispE | cg1035 | cg1039 | TatD related DNase. | PUTATIVE ISOPENTENYL MONOPHOSPHATE KINASE; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | 0.814 |
| Cgl0908 | ksgA | cg1035 | cg1038 | TatD related DNase. | PUTATIVE DIMETHYLADENOSINE TRANSFERASE; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.933 |
| Cgl0908 | rpf2 | cg1035 | cg1037 | TatD related DNase. | Putative RPF2 precursor, secreted protein; Factor that stimulates resuscitation of dormant cells. Has peptidoglycan (PG) hydrolytic activity. Active in the pM concentration range. Has little to no effect on actively-growing cells. PG fragments could either directly activate the resuscitation pathway of dormant bacteria or serve as a substrate for endogenous Rpf, resulting in low molecular weight products with resuscitation activity (By similarity). | 0.834 |
| Cgl0912 | Cgl0908 | cg1040 | cg1035 | ATPase component of ABC transporters with duplicated ATPase domains. | TatD related DNase. | 0.537 |
| Cgl0912 | ispE | cg1040 | cg1039 | ATPase component of ABC transporters with duplicated ATPase domains. | PUTATIVE ISOPENTENYL MONOPHOSPHATE KINASE; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | 0.869 |
| Cgl0912 | ksgA | cg1040 | cg1038 | ATPase component of ABC transporters with duplicated ATPase domains. | PUTATIVE DIMETHYLADENOSINE TRANSFERASE; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.950 |
| Cgl0912 | pdxK | cg1040 | cg1041 | ATPase component of ABC transporters with duplicated ATPase domains. | PYRIDOXAL/PYRIDOXINE/PYRIDOXAMINE KINASE; Belongs to the pyridoxine kinase family. | 0.939 |
| Cgl0912 | rpf2 | cg1040 | cg1037 | ATPase component of ABC transporters with duplicated ATPase domains. | Putative RPF2 precursor, secreted protein; Factor that stimulates resuscitation of dormant cells. Has peptidoglycan (PG) hydrolytic activity. Active in the pM concentration range. Has little to no effect on actively-growing cells. PG fragments could either directly activate the resuscitation pathway of dormant bacteria or serve as a substrate for endogenous Rpf, resulting in low molecular weight products with resuscitation activity (By similarity). | 0.907 |
| Cgl0912 | rpsD | cg1040 | cg0654 | ATPase component of ABC transporters with duplicated ATPase domains. | RIBOSOMAL PROTEIN S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.593 |
| Cgl0912 | rpsI | cg1040 | cg0674 | ATPase component of ABC transporters with duplicated ATPase domains. | 30S RIBOSOMAL PROTEIN S9; Belongs to the universal ribosomal protein uS9 family. | 0.585 |
| Cgl0912 | rpsL | cg1040 | cg0581 | ATPase component of ABC transporters with duplicated ATPase domains. | RIBOSOMAL PROTEIN S12; With S4 and S5 plays an important role in translational accuracy. | 0.593 |
| Cgl0912 | ychF | cg1040 | cg1171 | ATPase component of ABC transporters with duplicated ATPase domains. | Predicted GTPase; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | 0.457 |
| gidB | ksgA | cg3428 | cg1038 | GLUCOSE-INHIBITED DIVISION PROTEIN, GIDB(S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE); Specifically methylates the N7 position of guanine in position 518 of 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | PUTATIVE DIMETHYLADENOSINE TRANSFERASE; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.880 |
| gidB | rpsL | cg3428 | cg0581 | GLUCOSE-INHIBITED DIVISION PROTEIN, GIDB(S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE); Specifically methylates the N7 position of guanine in position 518 of 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | RIBOSOMAL PROTEIN S12; With S4 and S5 plays an important role in translational accuracy. | 0.912 |
| ispE | Cgl0908 | cg1039 | cg1035 | PUTATIVE ISOPENTENYL MONOPHOSPHATE KINASE; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | TatD related DNase. | 0.814 |
| ispE | Cgl0912 | cg1039 | cg1040 | PUTATIVE ISOPENTENYL MONOPHOSPHATE KINASE; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | ATPase component of ABC transporters with duplicated ATPase domains. | 0.869 |
| ispE | ksgA | cg1039 | cg1038 | PUTATIVE ISOPENTENYL MONOPHOSPHATE KINASE; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | PUTATIVE DIMETHYLADENOSINE TRANSFERASE; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.998 |
| ispE | pdxK | cg1039 | cg1041 | PUTATIVE ISOPENTENYL MONOPHOSPHATE KINASE; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | PYRIDOXAL/PYRIDOXINE/PYRIDOXAMINE KINASE; Belongs to the pyridoxine kinase family. | 0.775 |
| ispE | rpf2 | cg1039 | cg1037 | PUTATIVE ISOPENTENYL MONOPHOSPHATE KINASE; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | Putative RPF2 precursor, secreted protein; Factor that stimulates resuscitation of dormant cells. Has peptidoglycan (PG) hydrolytic activity. Active in the pM concentration range. Has little to no effect on actively-growing cells. PG fragments could either directly activate the resuscitation pathway of dormant bacteria or serve as a substrate for endogenous Rpf, resulting in low molecular weight products with resuscitation activity (By similarity). | 0.882 |
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