STRINGSTRING
Cgl1110 Cgl1110 Cgl2379 Cgl2379 miaA miaA miaB miaB Cgl1112 Cgl1112 folP2 folP2 dapE dapE Cgl1113 Cgl1113 Cgl1144 Cgl1144 Cgl1114 Cgl1114 rrmA rrmA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cgl1110Lysine decarboxylase family protein; Belongs to the LOG family. (256 aa)    
Predicted Functional Partners:
Cgl2379
Predicted Rossmann fold nucleotide-binding protein; Belongs to the LOG family.
 
  
 0.986
miaA
TRNA DELTA-2-ISOPENTENYLPYROPHOSPHATE (IPP) TRANSFERASE; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
  
  
 0.985
miaB
TRNA METHYLTHIOTRANSFERASE; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
      
 0.982
Cgl1112
Glycosyltransferase involved in cell wall biogenesis.
  
  
 0.961
folP2
DIHYDROPTEROATE SYNTHASE; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.
  
  
 0.899
dapE
SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE.
  
  
 0.768
Cgl1113
Conserved hypothetical protein.
  
    0.767
Cgl1144
Predicted hydrolase or acyltransferase (alpha/beta hydrolase superfamily).
      
 0.739
Cgl1114
Conserved hypothetical protein.
  
    0.694
rrmA
RRNA GUANINE-N1-METHYLTRANSFERASE.
  
    0.607
Your Current Organism:
Corynebacterium glutamicum
NCBI taxonomy Id: 196627
Other names: C. glutamicum ATCC 13032, Corynebacterium glutamicum ATCC 13032, Corynebacterium glutamicum str. ATCC 13032, Corynebacterium glutamicum strain ATCC 13032
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