STRINGSTRING
soxA soxA rsmI rsmI soxA-2 soxA-2 Cgl1580 Cgl1580 Cgl1418 Cgl1418 Cgl3041 Cgl3041 thiD1 thiD1 amtR amtR gltB gltB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
soxASarcosine oxidase-fragment. (135 aa)    
Predicted Functional Partners:
rsmI
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
      
 0.919
soxA-2
Sarcosine oxidase-N-terminal fragment.
 
      0.845
Cgl1580
Transposase.
  
  
 0.751
Cgl1418
NTP pyrophosphohydrolases including oxidative damage repair enzymes.
   
 
 0.650
Cgl3041
PUTATIVE NADH-DEPENDENT FLAVIN OXIDOREDUCTASE.
   
  
 0.626
thiD1
PHOSPHOMETHYLPYRIMIDINE KINASE / HYDROXYMETHYLPYRI; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). In the N-terminal section; belongs to the thiamine- phosphate synthase family. In the C-terminal section; belongs to the thiaminase-2 family.
  
  
 0.624
amtR
AMTR PROTEIN.
      
 0.531
gltB
GLUTAMINE 2-OXOGLUTARATE AMINOTRANSFERASE LARGE SU.
  
  
 0.477
Your Current Organism:
Corynebacterium glutamicum
NCBI taxonomy Id: 196627
Other names: C. glutamicum ATCC 13032, Corynebacterium glutamicum ATCC 13032, Corynebacterium glutamicum str. ATCC 13032, Corynebacterium glutamicum strain ATCC 13032
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