STRINGSTRING
Cgl2246 Cgl2246 Cgl2247 Cgl2247 vanK vanK Cgl1908 Cgl1908 Cgl1241 Cgl1241 rbpA rbpA vanB vanB vanA vanA aceE aceE aspS aspS Cgl2210 Cgl2210
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cgl2246Conserved hypothetical protein. (143 aa)    
Predicted Functional Partners:
Cgl2247
Hypothetical protein.
     
 0.989
vanK
VANILLATE TRANSPORTER VANK.
   
  
 0.799
Cgl1908
Conserved hypothetical protein.
  
    0.770
Cgl1241
Conserved hypothetical protein.
  
     0.752
rbpA
Putative membrane-associated GTPase; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.747
vanB
PROBABLE VANILLATE O-DEMETHYLASE.
      
 0.705
vanA
PROBABLE VANILLATE O-DEMETHYLASE OXYGENASE SUBUNIT.
      
 0.700
aceE
PYRUVATE DEHYDROGENASE E1 COMPONENT; Is a specific component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl- CoA and CO(2). AceE has reductase activity with pyruvate but does not react with 2-oxoglutarate.
     
 0.666
aspS
PROBABLE ASPARTYL-TRNA SYNTHETASE PROTEIN; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
  
     0.660
Cgl2210
Putative membrane protein.
  
    0.659
Your Current Organism:
Corynebacterium glutamicum
NCBI taxonomy Id: 196627
Other names: C. glutamicum ATCC 13032, Corynebacterium glutamicum ATCC 13032, Corynebacterium glutamicum str. ATCC 13032, Corynebacterium glutamicum strain ATCC 13032
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