STRINGSTRING
rpsT rpsT cg0494 cg0494 rpsO rpsO rpsF rpsF rplU rplU rplW rplW rpsK rpsK rpmI rpmI rpsP rpsP rpmA rpmA rpsL rpsL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsT30S RIBOSOMAL PROTEIN S20; Binds directly to 16S ribosomal RNA. (87 aa)    
Predicted Functional Partners:
cg0494
Extremely conserved hypothetical protein.
   
   0.999
rpsO
RIBOSOMAL PROTEIN S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
 
 0.999
rpsF
RIBOSOMAL PROTEIN S6; Binds together with S18 to 16S ribosomal RNA.
  
 
 0.999
rplU
RIBOSOMAL PROTEIN L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.998
rplW
50S RIBOSOMAL PROTEIN L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.
   
 
 0.997
rpsK
RIBOSOMAL PROTEIN S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
 
 0.997
rpmI
50S RIBOSOMAL PROTEIN L35; Belongs to the bacterial ribosomal protein bL35 family.
   
 
 0.997
rpsP
30S RIBOSOMAL PROTEIN S16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.997
rpmA
50S RIBOSOMAL PROTEIN L27; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.997
rpsL
RIBOSOMAL PROTEIN S12; With S4 and S5 plays an important role in translational accuracy.
   
 
 0.996
Your Current Organism:
Corynebacterium glutamicum
NCBI taxonomy Id: 196627
Other names: C. glutamicum ATCC 13032, Corynebacterium glutamicum ATCC 13032, Corynebacterium glutamicum str. ATCC 13032, Corynebacterium glutamicum strain ATCC 13032
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