STRINGSTRING
ditR ditR ditC ditC ditE ditE ditA3 ditA3 SDG25398.1 SDG25398.1 SDG56919.1 SDG56919.1 ditA1 ditA1 SDH94937.1 SDH94937.1 SDH22139.1 SDH22139.1 SDG58117.1 SDG58117.1 SDG62980.1 SDG62980.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ditRTranscriptional regulator, IclR family. (273 aa)    
Predicted Functional Partners:
ditC
2,3-dihydroxybiphenyl 1,2-dioxygenase.
 
  
 0.848
ditE
Predicted arabinose efflux permease, MFS family.
     
 0.834
ditA3
Ferredoxin.
 
   
 0.795
SDG25398.1
Transcriptional regulator, IclR family.
  
     0.753
SDG56919.1
Acetyl-CoA acetyltransferase.
 
 
 0.718
ditA1
Ring hydroxylating alpha subunit (catalytic domain).
 
   
 0.685
SDH94937.1
Transcriptional regulator, IclR family.
  
     0.663
SDH22139.1
Sensor histidine kinase inhibitor, KipI family.
  
    0.658
SDG58117.1
Indolepyruvate ferredoxin oxidoreductase.
    
  0.653
SDG62980.1
Indolepyruvate ferredoxin oxidoreductase.
    
  0.653
Your Current Organism:
Pseudomonas abietaniphila
NCBI taxonomy Id: 89065
Other names: ATCC 700689, CCUG 50779, CIP 106708, P. abietaniphila, strain BKME-9
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