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emhA emhA emhB emhB emhC emhC acrB acrB PFL_2142 PFL_2142 PFL_3617 PFL_3617 PFL_0537 PFL_0537 fitE fitE mexF mexF acrA acrA PFL_3616 PFL_3616
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
emhAEfflux transporter, membrane fusion protein subunit EmhA; Identified by similarity to GB:AAQ92180.1; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (385 aa)    
Predicted Functional Partners:
emhB
Efflux transporter, permease protein EmhB; Identified by similarity to GB:AAQ92181.1; match to protein family HMM PF00873; match to protein family HMM TIGR00915.
 0.998
emhC
Efflux transporter, outer membrane factor lipoprotein EmhC; Identified by similarity to GB:AAQ92182.1; match to protein family HMM PF02321; match to protein family HMM TIGR01845.
 
 0.995
acrB
Identified by similarity to SP:P31224; match to protein family HMM PF00873; match to protein family HMM TIGR00915.
 0.988
PFL_2142
Efflux transporter, outer membrane factor lipoprotein, NodT family; Identified by similarity to SP:Q51487; match to protein family HMM PF02321; match to protein family HMM TIGR01845.
 
 0.978
PFL_3617
RND transporter, HAE1 family; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 0.960
PFL_0537
Type I secretion outer membrane protein, TolC family; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844.
  
 0.927
fitE
Type I secretion outer membrane protein FitE; See Pechy-Tarr et. al. (PMID: 18484997) for more information; identified by similarity to GB:ABY91231.1; match to protein family HMM PF02321; match to protein family HMM TIGR01844.
  
 0.927
mexF
Multidrug efflux RND transporter, permease protein MexF; Identified by similarity to GB:CAA67864.1; match to protein family HMM PF00873; match to protein family HMM TIGR00915.
 
 0.915
acrA
Identified by similarity to SP:P0AE06; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 
0.907
PFL_3616
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 
0.900
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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