STRINGSTRING
orbC orbC orbD orbD orbB orbB AMP06622.1 AMP06622.1 hmuU hmuU AMP06619.1 AMP06619.1 orbF orbF orbG orbG AMP07572.1 AMP07572.1 orbS orbS hmuS hmuS
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
orbCABC transporter family protein. (288 aa)    
Predicted Functional Partners:
orbD
fecCD transport family protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.997
orbB
Periplasmic binding family protein.
 
 
 0.979
AMP06622.1
fecCD transport family protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.932
hmuU
fecCD transport family protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.928
AMP06619.1
Periplasmic binding family protein.
 
 
 0.921
orbF
Siderophore-iron reductase orbF.
 
    0.875
orbG
Taurine catabolism dioxygenase TauD, TfdA family protein.
       0.773
AMP07572.1
Amino acid adenylation domain protein.
 
  
 0.683
orbS
RNA polymerase sigma factor, sigma-70 family protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.658
hmuS
Hemin-degrading HemS.ChuX domain protein.
   
 0.655
Your Current Organism:
Collimonas pratensis
NCBI taxonomy Id: 279113
Other names: C. pratensis, CCUG 54728, Collimonas group D, Collimonas pratensis Hoppener-Ogawa et al. 2008, Collimonas sp. CTO 113, Collimonas sp. CTO 291, Collimonas sp. CTO 90, Collimonas sp. CTO 91, Collimonas sp. CTO 94, Collimonas sp. Ter113, Collimonas sp. Ter118, Collimonas sp. Ter227, Collimonas sp. Ter291, Collimonas sp. Ter90, Collimonas sp. Ter91, Collimonas sp. Ter94, LMG 23965, LMG:23965, strain Ter91
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