STRINGSTRING
orbD orbD orbC orbC orbB orbB AMP06619.1 AMP06619.1 hmuV hmuV orbF orbF hmuT hmuT AMP06621.1 AMP06621.1 orbG orbG orbS orbS pvdF pvdF
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
orbDfecCD transport family protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (697 aa)    
Predicted Functional Partners:
orbC
ABC transporter family protein.
 
 0.997
orbB
Periplasmic binding family protein.
 
 
 0.981
AMP06619.1
Periplasmic binding family protein.
 
 
 0.966
hmuV
Hemin import ATP-binding protein HmuV; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
 
 
 0.935
orbF
Siderophore-iron reductase orbF.
 
  
 0.922
hmuT
Hemin-binding periplasmic protein hmuT.
 
 
 0.919
AMP06621.1
ABC transporter family protein.
 
 
 0.916
orbG
Taurine catabolism dioxygenase TauD, TfdA family protein.
 
     0.814
orbS
RNA polymerase sigma factor, sigma-70 family protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.743
pvdF
Formyl transferase family protein.
  
     0.636
Your Current Organism:
Collimonas pratensis
NCBI taxonomy Id: 279113
Other names: C. pratensis, CCUG 54728, Collimonas group D, Collimonas pratensis Hoppener-Ogawa et al. 2008, Collimonas sp. CTO 113, Collimonas sp. CTO 291, Collimonas sp. CTO 90, Collimonas sp. CTO 91, Collimonas sp. CTO 94, Collimonas sp. Ter113, Collimonas sp. Ter118, Collimonas sp. Ter227, Collimonas sp. Ter291, Collimonas sp. Ter90, Collimonas sp. Ter91, Collimonas sp. Ter94, LMG 23965, LMG:23965, strain Ter91
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