Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA0980 | PA2794 | PA0980 | PA2794 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Pseudaminidase; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.432 |
| PA2461 | PA2794 | PA2461 | PA2794 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Pseudaminidase; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.457 |
| PA2794 | PA0980 | PA2794 | PA0980 | Pseudaminidase; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.432 |
| PA2794 | PA2461 | PA2794 | PA2461 | Pseudaminidase; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.457 |
| PA2794 | dusA | PA2794 | PA2795 | Pseudaminidase; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | Conserved hypothetical protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily. | 0.406 |
| PA2794 | lasR | PA2794 | PA1430 | Pseudaminidase; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | Transcriptional regulator LasR; Transcriptional activator of elastase structural gene (LasB). Binds to the PAI autoinducer; Belongs to the autoinducer-regulated transcriptional regulatory protein family. | 0.602 |
| PA2794 | rhlG | PA2794 | PA3387 | Pseudaminidase; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | Beta-ketoacyl reductase; Required for the synthesis of the beta-hydroxy acid moiety of rhamnolipids. | 0.883 |
| dusA | PA2794 | PA2795 | PA2794 | Conserved hypothetical protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily. | Pseudaminidase; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.406 |
| lasR | PA2794 | PA1430 | PA2794 | Transcriptional regulator LasR; Transcriptional activator of elastase structural gene (LasB). Binds to the PAI autoinducer; Belongs to the autoinducer-regulated transcriptional regulatory protein family. | Pseudaminidase; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.602 |
| rhlG | PA2794 | PA3387 | PA2794 | Beta-ketoacyl reductase; Required for the synthesis of the beta-hydroxy acid moiety of rhamnolipids. | Pseudaminidase; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.883 |