STRINGSTRING
BW43_01025 BW43_01025 pvdI pvdI BW43_01300 BW43_01300 BW43_02079 BW43_02079 viscC viscC viscB viscB viscA viscA BW43_00390 BW43_00390 efeU efeU BW43_01416 BW43_01416 BW43_01917 BW43_01917
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BW43_01025Putative iron-transport related exported protein. (689 aa)    
Predicted Functional Partners:
pvdI
Peptide synthase.
 
  
 0.838
BW43_01300
Peptide synthase.
  
  
 0.778
BW43_02079
Hydroxylase.
 
  
 0.772
viscC
Putative non-ribosomal peptide synthetase; Overlaps another CDS with the same product name.
  
  
 0.652
viscB
Putative non-ribosomal peptide synthetase; Overlaps another CDS with the same product name.
  
  
 0.652
viscA
Putative non-ribosomal peptide synthetase.
  
  
 0.652
BW43_00390
Cytochrome c/iron permease.
  
  
 0.590
efeU
Ferrous iron permease EfeU.
   
  
 0.560
BW43_01416
TonB-dependent siderophore receptor.
  
  
 0.542
BW43_01917
PepSY-associated TM helix domain-containing protein.
 
  
 0.525
Your Current Organism:
Pseudomonas sp. RIT357
NCBI taxonomy Id: 1470593
Other names: P. sp. RIT357
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