Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA0614 | PA0646 | PA0614 | PA0646 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.918 |
| PA0614 | prtN | PA0614 | PA0610 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Transcriptional regulator PrtN; Activates pyocin genes, probably by binding to the sequences conserved in their 5' non-coding regions (P box). | 0.617 |
| PA0614 | pyoS5 | PA0614 | PA0985 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Pyocin S5; Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). | 0.845 |
| PA0614 | pys2 | PA0614 | PA1150 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Pyocin S2; Causes breakdown of chromosomal DNA as well as complete inhibition of lipid synthesis in sensitive cells. | 0.529 |
| PA0646 | PA0614 | PA0646 | PA0614 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.918 |
| PA0646 | PA3866 | PA0646 | PA3866 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Pyocin protein; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.473 |
| PA0646 | pyoS5 | PA0646 | PA0985 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Pyocin S5; Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). | 0.833 |
| PA0646 | pys2 | PA0646 | PA1150 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Pyocin S2; Causes breakdown of chromosomal DNA as well as complete inhibition of lipid synthesis in sensitive cells. | 0.664 |
| PA2353 | pyoS5 | PA2353 | PA0985 | Conserved hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Pyocin S5; Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). | 0.700 |
| PA2954 | pyoS5 | PA2954 | PA0985 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Pyocin S5; Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). | 0.827 |
| PA3866 | PA0646 | PA3866 | PA0646 | Pyocin protein; Product name confidence: Class 2 (High similarity to functionally studied protein). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.473 |
| PA3866 | pyoS5 | PA3866 | PA0985 | Pyocin protein; Product name confidence: Class 2 (High similarity to functionally studied protein). | Pyocin S5; Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). | 0.692 |
| PA3866 | pys2 | PA3866 | PA1150 | Pyocin protein; Product name confidence: Class 2 (High similarity to functionally studied protein). | Pyocin S2; Causes breakdown of chromosomal DNA as well as complete inhibition of lipid synthesis in sensitive cells. | 0.459 |
| PA4539 | pyoS5 | PA4539 | PA0985 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Pyocin S5; Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). | 0.700 |
| PA5507 | pyoS5 | PA5507 | PA0985 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Pyocin S5; Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). | 0.700 |
| fptA | pyoS5 | PA4221 | PA0985 | Fe(III)-pyochelin outer membrane receptor precursor; High-affinity outer membrane receptor required for the transport of Fe(3+)-pyochelin. | Pyocin S5; Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). | 0.657 |
| prtN | PA0614 | PA0610 | PA0614 | Transcriptional regulator PrtN; Activates pyocin genes, probably by binding to the sequences conserved in their 5' non-coding regions (P box). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.617 |
| prtN | pyoS5 | PA0610 | PA0985 | Transcriptional regulator PrtN; Activates pyocin genes, probably by binding to the sequences conserved in their 5' non-coding regions (P box). | Pyocin S5; Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). | 0.715 |
| prtN | pys2 | PA0610 | PA1150 | Transcriptional regulator PrtN; Activates pyocin genes, probably by binding to the sequences conserved in their 5' non-coding regions (P box). | Pyocin S2; Causes breakdown of chromosomal DNA as well as complete inhibition of lipid synthesis in sensitive cells. | 0.663 |
| pyoS5 | PA0614 | PA0985 | PA0614 | Pyocin S5; Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.845 |
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