STRINGSTRING
tolR3 tolR3 tolQ2 tolQ2 tolQ1 tolQ1 sce4315 sce4315 tolQ3 tolQ3 tonB1 tonB1 tonB2 tonB2 tolR2 tolR2 exbD exbD aglR1 aglR1 sce0648 sce0648
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tolR3Biopolymer transport protein, ExbD/TolR family; Family membership. (138 aa)    
Predicted Functional Partners:
tolQ2
TolQ protein; Specificity unclear.
 
 
 0.955
tolQ1
Putative transport transmembrane protein, tolQ; High confidence in function and specificity.
 
 
 0.918
sce4315
Biopolymer transport protein, putative; Specificity unclear.
 
 
 0.915
tolQ3
tolQ protein; High confidence in function and specificity.
 
 
 0.906
tonB1
Putative TonB protein; Specificity unclear.
 
 
 0.903
tonB2
Putative TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.834
tolR2
Biopolymer transport protein, ExbD/TolR family; Specificity unclear.
 
    
0.832
exbD
Putative biopolymer transport protein (ExbD-like).
  
     0.771
aglR1
Adventurous gliding motility protein R; Family membership.
 
 
 0.761
sce0648
ompA-family exported protein; Family membership.
 
 
 
 0.742
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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