STRINGSTRING
tssC-4 tssC-4 tssB-4 tssB-4 KOY60717.1 KOY60717.1 KOY60722.1 KOY60722.1 tssB tssB tssB-2 tssB-2 tssA-3 tssA-3 tssM-2 tssM-2 tssB-5 tssB-5 tssB-3 tssB-3 tssK-3 tssK-3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tssC-4EvpB family type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (502 aa)    
Predicted Functional Partners:
tssB-4
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.989
KOY60717.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.973
KOY60722.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.967
tssB
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.963
tssB-2
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.942
tssA-3
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.933
tssM-2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.921
tssB-5
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.921
tssB-3
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.919
tssK-3
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.918
Your Current Organism:
Photorhabdus heterorhabditis
NCBI taxonomy Id: 880156
Other names: ATCC BAA-2479, DSM 25263, P. heterorhabditis, Photorhabdus heterorhabditis Ferreira et al. 2014, Photorhabdus sp. Q614, Photorhabdus sp. Q614(2009), Photorhabdus sp. SF41, Photorhabdus sp. SF783, strain SF41
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