STRINGSTRING
tssL2 tssL2 PSCI_5038 PSCI_5038 tssK2 tssK2 PSCI_5045 PSCI_5045 stp1 stp1 PSCI_5035 PSCI_5035 tssJ1 tssJ1 tssC-2 tssC-2 evpB evpB PSCI_5039 PSCI_5039 tssF2 tssF2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tssL2Type VI secretion protein TssL2. (289 aa)    
Predicted Functional Partners:
PSCI_5038
Type VI secretion lipoprotein.
 
  
 0.991
tssK2
Type VI secretion protein TssK2.
 
  
 0.983
PSCI_5045
Type VI secretion protein, EvpB/family.
 
  
 0.976
stp1
Serine/threonine phosphoprotein phosphatase Stp1.
 
  
 0.969
PSCI_5035
Type VI secretion protein IcmF.
 
 
 0.968
tssJ1
Type VI secretion lipoprotein TssJ1.
 
  
 0.963
tssC-2
Type VI secretion system.
 
  
 0.962
evpB
EvpB family type VI secretion protein.
 
  
 0.962
PSCI_5039
Putative uncharacterized protein.
 
  
 0.962
tssF2
Type VI secretion protein TssF2.
 
  
 0.960
Your Current Organism:
Pseudomonas sp. StFLB209
NCBI taxonomy Id: 1028989
Other names: P. sp. StFLB209
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